Adult Stony Corals
This post is about Synchrotron based XRD, XRF, Raman data on Stylophora Pistillata
Adult stony coral samples:
Mature nubbins and new growth fronts
samples
Samples can be found partially:
CBP_Lab_Data(\tal-nas)(Z:)/Coral1/Maayan
Bold samples were used in the manuscript
SP - Stylophora Pistillata:
- SP3: ROI 1
- SP3: ROI 2
- SPS3a (lateral)
PP - Pocillopora Verrucosa:
- pp2: ROI 2
- pp3: ROI 2
- pp1: ROI 1
- pp1: ROI 2
- pp2: ROI 1
- pp2: ROI 3
- pp3: ROI 1
- pp5: ROI 1
- pp5: ROI 2
- pp5: ROI 3
- pp7: ROI 1
- pp7: ROI 2
Underwater pictures
Hagai Nativ: https://www. hagainativ.com
- Photography of corals Stillophora Pistillata \
- SEM image
X-ray Absorption Images
- Transmission images from Spec-files (BESSY, found wihtin one of the last columns)
- Transmission (T) transformed into Absorption (A):
A = 1-T
–> T was determined with Fiji, looking for the highest intensity value within histogram and this is defined then as “100% transmission = 1 in formula”:
a) 100% = 593751.44
As -A = T - 1 and T = our image:
with Fiji:
͛ 4; click on transmission image → process → math → substract 593751.44 → afterwards multiply with (-1)
XRD
RAMAN paper figure
## Compare with ORIGIN: peak width of peak with the highest intensity (number 1086). The peak width broadens the more the crystals (aragonite/calcite) lose the cristalinity and apear amorphous. I want to see if ACC is preesnt ##
→ plot RAMAN sprectrum
→ background reduction
→ within a range of 1000 - 2000 [1\cm] peak width was determined with the Voigt-function
Written on March 23, 2025